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 HYPHY Reference:Constant:LIKELIHOOD_FUNCTION_OUTPUT

LIKELIHOOD_FUNCTION_OUTPUT Constant
  Controls how likelihood function is printed by fprintf.
Syntax  LIKELIHOOD_FUNCTION_OUTPUT=0,1,2,3,4 or 5;
Notes
0 - print just the likelihood function value;
1 - print the likelihood function value followed by a list of parameter values;
2(default) - print the likelihood function value followed by tree strings with only branch lengths;
3 - print the list of parameters and constraints;
4 -print a list of parameters, with values and constraints as a HyPhy batch language statement. May be useful for saving and restoring parameter estimates.
5 - same as 4, except that all tree declarations are also included.
Examples
 Last modified: 8/21/2002

 
Sergei L. Kosakovsky Pond and Spencer V. Muse, 1997-2002