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 HYPHY Reference:Batch language command:ReconstructAncestors

ReconstructAncestors Batch language command
  Reconstructs the list of ancestral sequences based on current parameter values. The sequences are reconstructed by finding the states of internal tree nodes which maximize the likelihood of the tree.
Syntax  DataSet datasetid = ReconstrucAncestors(likelihood_function_id);
Notes Will work only for models without rate heterogeneity.

datasetid is a valid identifier (alphanumeric sequence with possible underscores beginning with a letter or an underscore).
likelihood_function_id must reference an already defined likelihood function.

Examples
DataSet ds = ReconstructAncestors (likFunc);
 Last modified: 8/19/2002

 
Sergei L. Kosakovsky Pond and Spencer V. Muse, 1997-2002