BASESET
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Data File formatting instruction
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BASESET is used to indicate what characters form the fundamental states of the data.
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Syntax
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$BASESET:"new set" (new line char)
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Notes
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If "new set" = "BASE20", the data is assumed to contain aminoacid info (with standard ambigutity characters).
Must be present in the file before any data begins and before any TOKEN directives are issued. The new character set is simply a string where each character is understood as a new state and the first character is mapped to state '0Õ, the 2nd - to state '1'etc.
Does not apply to NEXUS files.
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Examples
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$BASESET:"ACGU" (RNA code)$BASESET:"01" (binary data)
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Last modified: 8/20/2002 |