Full
model name: Felsenstein 84, compatible with PHYLIP's dnaml.
Model type:
Nucleotide
Model
options:
- Single Rate Class. Rates are
homogeneous (same for all sites in the data).
- Multiple Rate Classes Different sites may have different rates. The
user specifies how many different rate classes there should be,
provides rates for each class, and indicates the probability
for each rate class.
Independent
Parameters: a (for each branch of the tree)
Rate Matrix:

with the vector representing
nucleotide frequencies (proportions) from the data. '*' is defined
to be the negative of the sum of all other row elements. 'R'
is the transition/transversion ratio parameter in dnaml.
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