Publications

SCPE: a tool to study sequence divergence under protein under protein structural constrains. Parisi, G, Fornasari,MS and Echave, J. Submitted March 2007 Bioinformatics
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Teaching non-covalent interactions using protein molecular evolution. Fornasari, MS, Parisi, G and Echave, J. Sent Abril 2007 Biochemistry and Molecular Biology Education.
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Rapid evolution of cytochrome c oxidase subunit II in camelids (Tylopoda , Camelidae). Di Rocco F, Parisi G, Zambelli A, Vidal Rioja L. Accepted July 2006 Journal of Bioenergetics and Biomembranes
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Evolutionary conservation of protein backbone flexibility. Maguid S, Fernández-Alberti S, Parisi G and Echave J. Accepted April 2006 Journal of Molecular Evolution
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Functional and structural characterization of starch synthase III from Arabidopsis thaliana. Busi, MV, Palopoli, N, Valdez, H, Fornasari, MS, Gomez-Casati, D, Parisi, G and Ugalde, R. Enviado Abril 2006 Biochemical Journal.
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Quaternary structure constraints on evolutionary sequence divergence. Fornasari, MS, Parisi, G and Echave, J. Aceptado Molecular Biology and Evolution.
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Starch-synthase III family encodes a tamden of three starch-binding domains. Palopoli, N, Busi, MV, Fornasari, MS, Gomez-Casati, D, Ugalde, R and Parisi, G. Protein, Structure, Function and Bioinformatics 2006 Oct 1;65(1):27-31, 2006.
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Generality of the Structurally Constrained Protein Evolution model: assessment on representatives of the 4 main fold classes. Parisi, G and Echave, J. Gene 345(1):45-53,2005.
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Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I. Perales, Mariano,Parisi, Gustavo, Fornasari, María Silvina, Colaneri, Alejandro, Villarreal, Fernando, González-Schain, Nahuel, Gómez-Casati, Diego, Braun, Hans-Peter., Araya, Alejandro, Echave, Julián, and Zabaleta, Eduardo. Plant Molecular Biology 2004 56:947-57.
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Gamma carbonic anhydrase in plant mitochondria. Parisi, G.,Perales, M., Fornasari, MS., Colaneri, A., Gonzalez-Schain, N., Gomez-Casati, D., Zimmermann, S., Brennicke, A., Araya, A., Echave, J., Ferry, J. and Zabaleta, Z. Plant Molecular Biology 55(2): 193-207, 2004.
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The structurally constrained protein evolution model accounts for sequence patterns of the LβH superfamily. Parisi, G. and Echave J. BMC Evolutionary Biology 4:41, 2004.
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Dynactins P25 and p27 are predicted to be LβH proteins. Parisi, G., Fornasari, MS and Echave J. Febs Letters 562:1-4. 2004.
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Site-specific amino-acid replacement matrices from structurally constraind protein evolution simulations. Fornasari, MS, Parisi, Gustavo and Echave J. Molecular Biology and Evolution. 19(3):352-356,2002.
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Structural constraints and emergence of sequence patterns in protein evolution. Parisi, G. and Echave, J. Molecular Biology and Evolution.18 (5): 750-756, 2001.
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Evolutionary Analysis of g Carbonic anhydrase and Structurally Related Proteins. Parisi, G., Fornasari, M., Echave, J. Molecular Phylogenetics and Evolution. 14: 3 323-334, 2000.
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Computational characterisation of potential RNA-binding sites in arenavirus nucleocapsid proteins. Parisi, G., Echave, J., Ghiringhelli, P., Romanowski, V. Virus Genes, 13:3, 247-254, 1996.
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