NEWS!! March 2021 - CoDNaS has been updated. New proteins have been added according to the PDB latest version.

CoDNaS
a database of Conformational Diversity of Native State in proteins







 
Example 1 | Example 2 | Example 3

Welcome to CoDNaS

CoDNaS is a protein conformational database based of entire proteins as derived from PDB. For each represented protein, the database contains the redundant collection of all corresponding different structures. These structures represent the solved structure of the same protein under different conditions and can be consequently considered as different instances of the protein dynamism (conformers). As a measure of protein conformational diversity (PCD) we use the CA RMSD obtained comparing all the structures deposited for each protein.


Citing CoDNaS

CoDNaS 2.0: A comprehensive database of protein conformational diversity in the native state.Alexander M. Monzon; Cristian O. Rohr; María Silvina Fornasari; Gustavo Parisi. Database. Oxford Journals. Accepted on March 2016.DOI:10.1093/database/baw038. Pubmed.


CoDNaS: a database of Conformational Diversity in the Native State of proteins. Alexander M. Monzon; Ezequiel Juritz; María Silvina Fornasari; Gustavo Parisi. Bioinformatics. Oxford Journals.Accepted on July 2013.DOI:10.1093/bioinformatics/btt405. Pubmed


 Contact info

For questions and/or comments, please contact us.


 CoDNaS uses the following external resources

         

    

 Latest Release

CoDNaS 2.6 based on PDB date March 2021

Total different proteins chains 29,148
Total protein chains conformations 430,151
Conformers average per protein 14,63
Total PDB structures coverage [%] 72,43